Sample sequences by locus tag input file #24
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ajtritt
requested changes
Sep 14, 2020
| for seq in skbio.io.read(path, **kwargs): | ||
| ltag = re.findall("\[locus_tag=([^[\]]*)\]", seq.metadata['description'])[0] | ||
| yield seq, ltag | ||
| if ltag in self.locus_ids: |
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make sure self.locus_ids is a set
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To add locus file, include --locus_tag locus_tags.txt